Student Projects

The institute always looks to expand its team and welcomes requests for internships and thesis projects at a broad range of aptitudes.

A collection of currently available project ideas may be found below. Please do not hesitate to reach out, if you are interested to work on one of them or just generally find the technologies we employ interesting.

 

Addition of clustering and ontology enrichment analyzes to autonomics output

Bioinformatics & Data Science
R programming
Difficulty: Medium
Bachelor of Science
The project aims at evaluating the performance of algorithms for feature clustering as well as and ontology enrichment. Based on earlier, mothballed functionality, an…
Jan 18, 2023
Johannes Graumann

 

Align data structures produced by autonomics-provided readers of proteomics data

Bioinformatics & Data Science
R programming
Difficulty: Entry Level
Internship
Bachelor of Science
Our in house data analysis pipeline autonomics currently harbors functionality to import mass spectrometry-based proteomics input data processed by the raw data analysis…
Jan 18, 2023
Johannes Graumann

 

Comparative evaluation of tests for patient survival data

Bioinformatics & Data Science
R programming
Statistics
Difficulty: Medium
Bachelor of Science
The project aims at the evaluation of the performance of tests for patient survival data like Cox Proportional Hazards and log rank tests, as well as methods for uncensored…
Jan 18, 2023
Johannes Graumann

 

Evaluation of proteomic differential expression analysis/modeling on the peptide rather than protein(group) level

Bioinformatics & Data Science
R programming
Statistics
Difficulty: Advanced
Master of Science
The project aims at exploring the differences and advantages of proteomic differential expression analysis on quantified peptide input data rather than pre-aggregated…
Jan 18, 2023
Johannes Graumann

 

Expansion of autonomics to input from BD’s Rhapsody Single Cell Transcriptomics System

Bioinformatics & Data Science
R programming
Difficulty: Medium
Bachelor of Science
This project aims at the expansion of the existing RNAseq capabilities of autonomics, our in house data analysis pipeline to read input data generated by Rhapsody, a…
Jan 18, 2023
Johannes Graumann

 

Expansion of autonomics to input from CompoundDiscoverer-processed metabolomics data

Bioinformatics & Data Science
R programming
Difficulty: Entry Level
Internship
Bachelor of Science
Expanding the existing capabilities of autonomics and following existing functionality as a template, the project aims at adapting the platform to deal with input data…
Jan 18, 2023
Johannes Graumann

 

Expansion of autonomics to input from Salmon-quantified Transcriptomic data

Bioinformatics & Data Science
R programming
Difficulty: Entry Level
Internship
Bachelor of Science
Expanding the existing capabilities of autonomics and following existing functionality as a template, the project aims at adapting the platform to deal with input data…
Jan 18, 2023
Johannes Graumann
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